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Education

Research Experience

Publications

@misc{liang2021fruit,
    title={Can a Fruit Fly Learn Word Embeddings?}, 
    author={Yuchen Liang and Chaitanya K. Ryali and Benjamin Hoover and Leopold Grinberg and Saket Navlakha and Mohammed J. Zaki and Dmitry Krotov},
    year={2021},
    eprint={2101.06887},
    url = "https://arxiv.org/pdf/2101.06887.pdf",
    archivePrefix={arXiv},
    primaryClass={cs.CL}
}

@article {Bullock2021.01.27.21250611,
  author = {Bullock, Joseph and Cuesta-Lazaro, Carolina and Quera-Bofarull, Arnau and Katta, Anjali and Hoffmann Pham, Katherine and Hoover, Benjamin and Strobelt, Hendrik and Moreno Jimenez, Rebeca and Sedgewick, Aidan and Samir Evers, Egmond and Kennedy, David and Harlass, Sandra and Gidraf Kahindo Maina, Allen and Hussien, Ahmad and Luengo-Oroz, Miguel},
  title = {Operational response simulation tool for epidemics within refugee and IDP settlements},
  elocation-id = {2021.01.27.21250611},
  year = {2021},
  doi = {10.1101/2021.01.27.21250611},
  publisher = {Cold Spring Harbor Laboratory Press},
  URL = {https://www.medrxiv.org/content/early/2021/01/29/2021.01.27.21250611},
  eprint = {https://www.medrxiv.org/content/early/2021/01/29/2021.01.27.21250611.full.pdf},
  journal = {medRxiv}
}

@article{Schwaller2020Unsupervised,
  author = "Philippe Schwaller and Benjamin Hoover and Jean-Louis Reymond and Hendrik Strobelt and Teodoro Laino",
  title = "{Unsupervised Attention-Guided Atom-Mapping}",
  year = "2020",
  month = "5",
  url = "https://chemrxiv.org/articles/Unsupervised_Attention-Guided_Atom-Mapping/12298559",
  doi = "10.26434/chemrxiv.12298559.v1"
}      

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Neurips citation available soon.
@misc{chenthamarakshan2020cogmol,
    title={CogMol: Target-Specific and Selective Drug Design for COVID-19 Using Deep Generative Models}, 
    author={Vijil Chenthamarakshan and Payel Das and Samuel C. Hoffman and Hendrik Strobelt and Inkit Padhi and Kar Wai Lim and Benjamin Hoover and Matteo Manica and Jannis Born and Teodoro Laino and Aleksandra Mojsilovic},
    year={2020},
    eprint={2004.01215},
    archivePrefix={arXiv},
    primaryClass={cs.LG}
}

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@inproceedings{hoover-etal-2020-exbert,
  title = "{exBERT: A Visual Analysis Tool to Explore Learned Representations in Transformer Models}",
  author = "Hoover, Benjamin  and
    Strobelt, Hendrik  and
    Gehrmann, Sebastian",
  booktitle = "Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics: System Demonstrations",
  month = jul,
  year = "2020",
  address = "Online",
  publisher = "Association for Computational Linguistics",
  url = "https://www.aclweb.org/anthology/2020.acl-demos.22",
  doi = "10.18653/v1/2020.acl-demos.22",
  pages = "187--196",
}

@article{doi:10.1021/acssynbio.7b00174,
  author = {Moreb, Eirik Adim and Hoover, Benjamin and Yaseen, Adam and Valyasevi, Nisakorn and Roecker, Zoe and Menacho-Melgar, Romel and Lynch, Michael D.},
  title = {Managing the SOS Response for Enhanced CRISPR-Cas-Based Recombineering in E. coli through Transient Inhibition of Host RecA Activity},
  journal = {ACS Synthetic Biology},
  volume = {6},
  number = {12},
  pages = {2209-2218},
  year = {2017},
  doi = {10.1021/acssynbio.7b00174}, 
  note = {PMID: 28915012},
  URL = { https://doi.org/10.1021/acssynbio.7b00174 },
  eprint = { https://doi.org/10.1021/acssynbio.7b00174 }
}

Talks

Teaching